IL_5LZY_198

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZY_198 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.1045

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

5LZY|1|9|A|599
5LZY|1|9|G|600
5LZY|1|9|G|601
5LZY|1|9|G|602
5LZY|1|9|C|603
5LZY|1|9|A|604
5LZY|1|9|A|605
5LZY|1|9|G|606
*
5LZY|1|9|C|636
5LZY|1|9|U|637

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain CC

uS5

Chain JJ

Ribosomal protein S9 (Predicted)

Chain ee

eS30