IL_5LZY_202

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

5LZY|1|9|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZY_202 not in the Motif Atlas

Geometric match to IL_4LFB_022

Geometric discrepancy: 0.1556

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

5LZY|1|9|G|665
5LZY|1|9|U|666
5LZY|1|9|U|667
5LZY|1|9|A|668
5LZY|1|9|A|669
5LZY|1|9|A|670
5LZY|1|9|A|671
*
5LZY|1|9|U|1161
5LZY|1|9|C|1162

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain CC

uS5

Chain XX

uS12

Chain aa

eS26