IL_5LZY_225

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZY_225 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0939

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

5LZY|1|9|G|1168
5LZY|1|9|G|1169
5LZY|1|9|A|1170
5LZY|1|9|G|1171
5LZY|1|9|U|1172
5LZY|1|9|A|1173
5LZY|1|9|U|1174
5LZY|1|9|G|1175
*
5LZY|1|9|U|1186
5LZY|1|9|G|1187
5LZY|1|9|A|1188
5LZY|1|9|A|1189
5LZY|1|9|A|1190
5LZY|1|9|C|1191

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain XX

uS12

Chain n

eL41