IL_5LZY_278
3D structure
- PDB id
- 5LZY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.99 Å
Loop
- Sequence
- GUAUUG*CAAGAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LZY_278 not in the Motif Atlas
- Geometric match to IL_5TBW_476
- Geometric discrepancy: 0.3582
- The information below is about IL_5TBW_476
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
5LZY|1|9|G|942
5LZY|1|9|U|943
5LZY|1|9|A|944
5LZY|1|9|U|945
5LZY|1|9|U|946
5LZY|1|9|G|947
*
5LZY|1|9|C|979
5LZY|1|9|A|980
5LZY|1|9|A|981
5LZY|1|9|G|982
5LZY|1|9|A|983
5LZY|1|9|C|984
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain A
- uL2
- Chain BB
- 40S ribosomal protein S3a
- Chain OO
- uS11
Coloring options: