IL_5LZZ_080

3D structure

PDB id

5LZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

5LZZ|1|5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZZ_080 not in the Motif Atlas

Homologous match to IL_5TBW_054

Geometric discrepancy: 0.185

The information below is about IL_5TBW_054

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

5LZZ|1|5|U|1957
5LZZ|1|5|A|1958
5LZZ|1|5|U|1959
5LZZ|1|5|A|1960
5LZZ|1|5|G|1961
5LZZ|1|5|A|1962
5LZZ|1|5|C|1963
5LZZ|1|5|A|1964
5LZZ|1|5|G|1965
*
5LZZ|1|5|C|2022
5LZZ|1|5|C|2023
5LZZ|1|5|G|2024
5LZZ|1|5|A|2025
5LZZ|1|5|A|2026

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain m

eL40

Chain s

uL10