IL_5LZZ_093

3D structure

PDB id

5LZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZZ_093 not in the Motif Atlas

Homologous match to IL_5TBW_067

Geometric discrepancy: 0.2125

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

5LZZ|1|5|C|2589
5LZZ|1|5|G|2590
5LZZ|1|5|A|2591
5LZZ|1|5|U|2592
5LZZ|1|5|C|2593
*
5LZZ|1|5|G|2752
5LZZ|1|5|G|2753
5LZZ|1|5|G|2754
5LZZ|1|5|A|2755
5LZZ|1|5|G|2756

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain Z

60S ribosomal protein L27

Chain g

eL34