IL_5LZZ_181

3D structure

PDB id

5LZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

5LZZ|1|9|G|113, 5LZZ|1|9|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZZ_181 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.1442

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

5LZZ|1|9|U|112
5LZZ|1|9|G|113
5LZZ|1|9|G|114
5LZZ|1|9|U|115
*
5LZZ|1|9|A|348
5LZZ|1|9|A|349

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain II

40S ribosomal protein S8

Chain LL

uS17