IL_5LZZ_204

3D structure

PDB id

5LZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

5LZZ|1|9|A|628, 5LZZ|1|9|U|630, 5LZZ|1|9|U|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZZ_204 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.4266

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5LZZ|1|9|G|611
5LZZ|1|9|U|612
5LZZ|1|9|G|613
5LZZ|1|9|C|614
5LZZ|1|9|C|615
5LZZ|1|9|A|616
5LZZ|1|9|G|617
*
5LZZ|1|9|C|624
5LZZ|1|9|G|625
5LZZ|1|9|G|626
5LZZ|1|9|U|627
5LZZ|1|9|A|628
5LZZ|1|9|A|629
5LZZ|1|9|U|630
5LZZ|1|9|U|631
5LZZ|1|9|C|632

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain DD

uS3

Chain XX

uS12

Chain ee

eS30

Chain ii

Protein pelota homolog