IL_5M1J_002

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

5M1J|1|44|C|151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_002 not in the Motif Atlas

Homologous match to IL_8C3A_002

Geometric discrepancy: 0.1574

The information below is about IL_8C3A_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

5M1J|1|14|C|7
5M1J|1|14|C|8
*
5M1J|1|44|G|150
5M1J|1|44|C|151
5M1J|1|44|G|152

Current chains

Chain 14

25S ribosomal RNA

Chain 44

5.8S ribosomal RNA

Nearby chains

Chain G5

60S ribosomal protein L8-A

Chain N5

60S ribosomal protein L15-A

Chain X5

60S ribosomal protein L25