IL_5M1J_003
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AAUC*GUU
- Length
- 7 nucleotides
- Bulged bases
- 5M1J|1|14|U|14
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_003 not in the Motif Atlas
- Geometric match to IL_3LA5_001
- Geometric discrepancy: 0.2124
- The information below is about IL_3LA5_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86319.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 269
Unit IDs
5M1J|1|14|A|12
5M1J|1|14|A|13
5M1J|1|14|U|14
5M1J|1|14|C|15
*
5M1J|1|44|G|144
5M1J|1|44|U|145
5M1J|1|44|U|146
Current chains
- Chain 14
- 25S ribosomal RNA
- Chain 44
- 5.8S ribosomal RNA
Nearby chains
- Chain G5
- 60S ribosomal protein L8-A
- Chain N5
- 60S ribosomal protein L15-A
- Chain X5
- 60S ribosomal protein L25
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