IL_5M1J_023

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_023 not in the Motif Atlas

Homologous match to IL_5TBW_023

Geometric discrepancy: 0.0931

The information below is about IL_5TBW_023

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5M1J|1|14|G|725
5M1J|1|14|G|726
5M1J|1|14|G|727
5M1J|1|14|G|728
*
5M1J|1|14|U|741
5M1J|1|14|G|742
5M1J|1|14|C|743
5M1J|1|14|A|744
5M1J|1|14|C|745

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain Q5

60S ribosomal protein L18-A

Chain b5

60S ribosomal protein L29