IL_5M1J_030

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_030 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.1731

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

5M1J|1|14|U|834
5M1J|1|14|G|835
5M1J|1|14|A|836
5M1J|1|14|A|837
5M1J|1|14|G|838
*
5M1J|1|14|U|855
5M1J|1|14|G|856
5M1J|1|14|G|857
5M1J|1|14|A|858
5M1J|1|14|G|859

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain A5

60S ribosomal protein L2-A

Chain R5

60S ribosomal protein L19-A

Chain p5

60S ribosomal protein L43-B