3D structure

PDB id
5M1J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nonstop ribosomal complex bound with Dom34 and Hbs1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GCGAAU*AAAC
Length
10 nucleotides
Bulged bases
5M1J|1|14|G|1001
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5M1J_040 not in the Motif Atlas
Homologous match to IL_5TBW_040
Geometric discrepancy: 0.1185
The information below is about IL_5TBW_040
Detailed Annotation
C-loop with bulged stacked A's
Broad Annotation
C-loop
Motif group
IL_02509.3
Basepair signature
cWW-cWS-cWW-cWW-R-cSH-tWH-R
Number of instances in this motif group
6

Unit IDs

5M1J|1|14|G|999
5M1J|1|14|C|1000
5M1J|1|14|G|1001
5M1J|1|14|A|1002
5M1J|1|14|A|1003
5M1J|1|14|U|1004
*
5M1J|1|14|A|1046
5M1J|1|14|A|1047
5M1J|1|14|A|1048
5M1J|1|14|C|1049

Current chains

Chain 14
25S ribosomal RNA

Nearby chains

Chain 34
5S ribosomal RNA; 5S rRNA
Chain D5
60S ribosomal protein L5
Chain I5
60S ribosomal protein L10
Chain T5
60S ribosomal protein L21-A

Coloring options:


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