IL_5M1J_072

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_072 not in the Motif Atlas

Homologous match to IL_5TBW_072

Geometric discrepancy: 0.1669

The information below is about IL_5TBW_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39753.2

Basepair signature

cWW-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5M1J|1|14|U|1702
5M1J|1|14|U|1703
5M1J|1|14|A|1704
5M1J|1|14|U|1705
5M1J|1|14|C|1706
5M1J|1|14|A|1707
*
5M1J|1|14|U|1737
5M1J|1|14|C|1738
5M1J|1|14|U|1739
5M1J|1|14|U|1740
5M1J|1|14|A|1741
5M1J|1|14|U|1742
5M1J|1|14|G|1743

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain g5

60S ribosomal protein L34-A

Chain p5

60S ribosomal protein L43-B