IL_5M1J_085

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUG*CGAG

Length

7 nucleotides

Bulged bases

5M1J|1|14|A|2324

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_085 not in the Motif Atlas

Geometric match to IL_4V9K_064

Geometric discrepancy: 0.2349

The information below is about IL_4V9K_064

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

5M1J|1|14|C|2128
5M1J|1|14|U|2129
5M1J|1|14|G|2130
*
5M1J|1|14|C|2322
5M1J|1|14|G|2323
5M1J|1|14|A|2324
5M1J|1|14|G|2325

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain n5

60S ribosomal protein L41-B

Chain p5

60S ribosomal protein L43-B