IL_5M1J_088

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGC*GUAAA

Length

8 nucleotides

Bulged bases

5M1J|1|14|A|2243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_088 not in the Motif Atlas

Geometric match to IL_5J7L_008

Geometric discrepancy: 0.347

The information below is about IL_5J7L_008

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

5M1J|1|14|U|2200
5M1J|1|14|G|2201
5M1J|1|14|C|2202
*
5M1J|1|14|G|2240
5M1J|1|14|U|2241
5M1J|1|14|A|2242
5M1J|1|14|A|2243
5M1J|1|14|A|2244

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain 22

Small subunit ribosomal RNA; SSU rRNA

Chain A5

60S ribosomal protein L2-A