IL_5M1J_090

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_090 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.0888

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

5M1J|1|14|U|2211
5M1J|1|14|C|2212
5M1J|1|14|A|2213
5M1J|1|14|A|2214
5M1J|1|14|A|2215
5M1J|1|14|G|2216
5M1J|1|14|U|2217
*
5M1J|1|14|A|2228
5M1J|1|14|A|2229
5M1J|1|14|C|2230
5M1J|1|14|C|2231
5M1J|1|14|A|2232
5M1J|1|14|A|2233
5M1J|1|14|G|2234

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain i5

60S ribosomal protein L36-A

Chain o5

60S ribosomal protein L42-B