IL_5M1J_092

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

5M1J|1|14|A|2281, 5M1J|1|14|C|2287, 5M1J|1|14|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_092 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.1457

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

5M1J|1|14|C|2277
5M1J|1|14|C|2278
5M1J|1|14|A|2279
5M1J|1|14|A|2280
5M1J|1|14|A|2281
5M1J|1|14|U|2282
5M1J|1|14|G|2283
5M1J|1|14|C|2284
5M1J|1|14|C|2285
5M1J|1|14|U|2286
5M1J|1|14|C|2287
5M1J|1|14|G|2288
*
5M1J|1|14|C|2304
5M1J|1|14|G|2305
5M1J|1|14|C|2306
5M1J|1|14|G|2307

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain 22

Small subunit ribosomal RNA; SSU rRNA

Chain n5

60S ribosomal protein L41-B