IL_5M1J_103
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAU*AGUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_103 not in the Motif Atlas
- Homologous match to IL_8C3A_108
- Geometric discrepancy: 0.1693
- The information below is about IL_8C3A_108
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_71241.2
- Basepair signature
- cWW-cWW-tSH-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
5M1J|1|14|C|2666
5M1J|1|14|A|2667
5M1J|1|14|U|2668
*
5M1J|1|14|A|2686
5M1J|1|14|G|2687
5M1J|1|14|U|2688
5M1J|1|14|A|2689
5M1J|1|14|G|2690
Current chains
- Chain 14
- 25S ribosomal RNA
Nearby chains
- Chain 34
- 5S ribosomal RNA; 5S rRNA
- Chain D5
- 60S ribosomal protein L5
- Chain J5
- 60S ribosomal protein L11-A
- Chain T5
- 60S ribosomal protein L21-A
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