IL_5M1J_109

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

5M1J|1|14|U|2860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_109 not in the Motif Atlas

Homologous match to IL_5TBW_105

Geometric discrepancy: 0.1764

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

5M1J|1|14|G|2828
5M1J|1|14|U|2829
5M1J|1|14|G|2830
*
5M1J|1|14|U|2858
5M1J|1|14|U|2859
5M1J|1|14|U|2860
5M1J|1|14|U|2861
5M1J|1|14|U|2862

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain B5

60S ribosomal protein L3

Chain I5

60S ribosomal protein L10