IL_5M1J_112

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

5M1J|1|14|G|2945, 5M1J|1|14|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_112 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.1421

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

5M1J|1|14|C|2879
5M1J|1|14|U|2880
5M1J|1|14|C|2881
*
5M1J|1|14|G|2943
5M1J|1|14|U|2944
5M1J|1|14|G|2945
5M1J|1|14|A|2946
5M1J|1|14|G|2947

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain B5

60S ribosomal protein L3

Chain V5

60S ribosomal protein L23-A