IL_5M1J_122

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

5M1J|1|14|U|3056, 5M1J|1|14|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_122 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.141

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

5M1J|1|14|U|3054
5M1J|1|14|U|3055
5M1J|1|14|U|3056
5M1J|1|14|U|3057
5M1J|1|14|U|3058
5M1J|1|14|G|3059
*
5M1J|1|14|C|3084
5M1J|1|14|G|3085
5M1J|1|14|A|3086
5M1J|1|14|A|3087
5M1J|1|14|G|3088

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain B5

60S ribosomal protein L3

Chain W5

60S ribosomal protein L24-A

Chain d5

60S ribosomal protein L31-A