IL_5M1J_132

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUUG*CUUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_132 not in the Motif Atlas

Geometric match to IL_5TBW_129

Geometric discrepancy: 0.1283

The information below is about IL_5TBW_129

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5M1J|1|14|U|3300
5M1J|1|14|U|3301
5M1J|1|14|U|3302
5M1J|1|14|G|3303
*
5M1J|1|14|C|3311
5M1J|1|14|U|3312
5M1J|1|14|U|3313
5M1J|1|14|A|3314

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain B5

60S ribosomal protein L3

Chain P5

60S ribosomal protein L17-A

Chain d5

60S ribosomal protein L31-A