IL_5M1J_136

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

5M1J|1|14|G|3369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_136 not in the Motif Atlas

Homologous match to IL_5TBW_133

Geometric discrepancy: 0.1237

The information below is about IL_5TBW_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83162.8

Basepair signature

cWW-cWW-tSH-cWW-tHH-L

Number of instances in this motif group

4

Unit IDs

5M1J|1|14|U|3332
5M1J|1|14|G|3333
5M1J|1|14|U|3334
5M1J|1|14|A|3335
5M1J|1|14|A|3336
5M1J|1|14|G|3337
*
5M1J|1|14|C|3367
5M1J|1|14|U|3368
5M1J|1|14|G|3369
5M1J|1|14|A|3370
5M1J|1|14|G|3371

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain B5

60S ribosomal protein L3

Chain W5

60S ribosomal protein L24-A

Chain d5

60S ribosomal protein L31-A