IL_5M1J_138

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_138 not in the Motif Atlas

Geometric match to IL_5TBW_135

Geometric discrepancy: 0.3099

The information below is about IL_5TBW_135

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

5M1J|1|14|A|3342
5M1J|1|14|G|3343
5M1J|1|14|A|3344
5M1J|1|14|G|3345
*
5M1J|1|14|C|3360
5M1J|1|14|G|3361
5M1J|1|14|A|3362
5M1J|1|14|U|3363

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain I2

40S ribosomal protein S8-A

Chain R5

60S ribosomal protein L19-A

Chain W5

60S ribosomal protein L24-A