3D structure

PDB id
5M1J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nonstop ribosomal complex bound with Dom34 and Hbs1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
AGAG*CGAU
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5M1J_138 not in the Motif Atlas
Geometric match to IL_5TBW_135
Geometric discrepancy: 0.3099
The information below is about IL_5TBW_135
Detailed Annotation
Double sheared; A in syn
Broad Annotation
Double sheared
Motif group
IL_09705.12
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
35

Unit IDs

5M1J|1|14|A|3342
5M1J|1|14|G|3343
5M1J|1|14|A|3344
5M1J|1|14|G|3345
*
5M1J|1|14|C|3360
5M1J|1|14|G|3361
5M1J|1|14|A|3362
5M1J|1|14|U|3363

Current chains

Chain 14
25S ribosomal RNA

Nearby chains

Chain I2
40S ribosomal protein S8-A
Chain R5
60S ribosomal protein L19-A
Chain W5
60S ribosomal protein L24-A

Coloring options:


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