IL_5M1J_142
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UCAAA*UGACAA
- Length
- 11 nucleotides
- Bulged bases
- 5M1J|1|22|A|468
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_142 not in the Motif Atlas
- Geometric match to IL_4V88_386
- Geometric discrepancy: 0.1479
- The information below is about IL_4V88_386
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_37842.2
- Basepair signature
- cWW-cWW-L-R-cWW-cWW-R-L
- Number of instances in this motif group
- 4
Unit IDs
5M1J|1|22|U|37
5M1J|1|22|C|38
5M1J|1|22|A|39
5M1J|1|22|A|40
5M1J|1|22|A|41
*
5M1J|1|22|U|466
5M1J|1|22|G|467
5M1J|1|22|A|468
5M1J|1|22|C|469
5M1J|1|22|A|470
5M1J|1|22|A|471
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain A6
- Protein HBS1
- Chain E2
- 40S ribosomal protein S4-A
- Chain J2
- 40S ribosomal protein S9-A
- Chain Y2
- 40S ribosomal protein S24-A
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