IL_5M1J_156

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUG*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_156 not in the Motif Atlas

Homologous match to IL_4V88_400

Geometric discrepancy: 0.2325

The information below is about IL_4V88_400

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47298.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

5M1J|1|22|C|270
5M1J|1|22|A|271
5M1J|1|22|U|272
5M1J|1|22|G|273
*
5M1J|1|22|U|283
5M1J|1|22|G|284
5M1J|1|22|G|285

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain G2

40S ribosomal protein S6-A