IL_5M1J_167
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_167 not in the Motif Atlas
- Geometric match to IL_4V88_413
- Geometric discrepancy: 0.1042
- The information below is about IL_4V88_413
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 10
Unit IDs
5M1J|1|22|A|550
5M1J|1|22|G|551
5M1J|1|22|G|552
5M1J|1|22|G|553
5M1J|1|22|C|554
5M1J|1|22|A|555
5M1J|1|22|A|556
5M1J|1|22|G|557
*
5M1J|1|22|C|587
5M1J|1|22|U|588
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain A1
- Protein DOM34
- Chain C2
- 40S ribosomal protein S2
- Chain D2
- 40S ribosomal protein S3
- Chain J2
- 40S ribosomal protein S9-A
- Chain e2
- 40S ribosomal protein S30-A
Coloring options: