IL_5M1J_172

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCGGUU*AACGGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_172 not in the Motif Atlas

Geometric match to IL_4LFB_030

Geometric discrepancy: 0.3863

The information below is about IL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04668.2

Basepair signature

cWW-cWW-cWW-L-R-L-R-cWW

Number of instances in this motif group

8

Unit IDs

5M1J|1|22|C|645
5M1J|1|22|C|646
5M1J|1|22|G|647
5M1J|1|22|G|648
5M1J|1|22|U|649
5M1J|1|22|U|650
*
5M1J|1|22|A|684
5M1J|1|22|A|685
5M1J|1|22|C|686
5M1J|1|22|G|687
5M1J|1|22|G|688
5M1J|1|22|G|689

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain J2

40S ribosomal protein S9-A

Chain W2

40S ribosomal protein S22-A