IL_5M1J_176
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAAAAAAUU*AUAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- 5M1J|1|22|U|794
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_176 not in the Motif Atlas
- Homologous match to IL_4V88_425
- Geometric discrepancy: 0.2326
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5M1J|1|22|G|751
5M1J|1|22|A|752
5M1J|1|22|A|753
5M1J|1|22|A|754
5M1J|1|22|A|755
5M1J|1|22|A|756
5M1J|1|22|A|757
5M1J|1|22|U|758
5M1J|1|22|U|759
*
5M1J|1|22|A|791
5M1J|1|22|U|792
5M1J|1|22|A|793
5M1J|1|22|U|794
5M1J|1|22|U|795
5M1J|1|22|A|796
5M1J|1|22|G|797
5M1J|1|22|C|798
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain E2
- 40S ribosomal protein S4-A
- Chain J2
- 40S ribosomal protein S9-A
- Chain L2
- 40S ribosomal protein S11-A
- Chain W2
- 40S ribosomal protein S22-A
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