IL_5M1J_201
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CG*CAG
- Length
- 5 nucleotides
- Bulged bases
- 5M1J|1|22|A|1427
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_201 not in the Motif Atlas
- Homologous match to IL_4V88_452
- Geometric discrepancy: 0.2279
- The information below is about IL_4V88_452
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
5M1J|1|22|C|1280
5M1J|1|22|G|1281
*
5M1J|1|22|C|1426
5M1J|1|22|A|1427
5M1J|1|22|G|1428
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain A1
- Protein DOM34
- Chain C2
- 40S ribosomal protein S2
- Chain D2
- 40S ribosomal protein S3
- Chain Q2
- 40S ribosomal protein S16-A
- Chain U2
- 40S ribosomal protein S20
- Chain d2
- 40S ribosomal protein S29-A
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