IL_5M1J_208

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_208 not in the Motif Atlas

Homologous match to IL_4V88_461

Geometric discrepancy: 0.1706

The information below is about IL_4V88_461

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

5M1J|1|22|C|1495
5M1J|1|22|U|1496
5M1J|1|22|U|1497
5M1J|1|22|G|1498
*
5M1J|1|22|C|1509
5M1J|1|22|U|1510
5M1J|1|22|U|1511
5M1J|1|22|G|1512

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain T2

40S ribosomal protein S19-A