IL_5M1J_209

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_209 not in the Motif Atlas

Geometric match to IL_8C3A_507

Geometric discrepancy: 0.1419

The information below is about IL_8C3A_507

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.1

Basepair signature

cWW-tSH-L-R-L-R-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5M1J|1|22|G|1540
5M1J|1|22|G|1541
5M1J|1|22|G|1542
5M1J|1|22|A|1543
5M1J|1|22|U|1544
5M1J|1|22|A|1545
*
5M1J|1|22|U|1566
5M1J|1|22|U|1567
5M1J|1|22|C|1568
5M1J|1|22|A|1569
5M1J|1|22|A|1570
5M1J|1|22|C|1571

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain F2

40S ribosomal protein S5

Chain S2

40S ribosomal protein S18-A

Chain T2

40S ribosomal protein S19-A