IL_5M1J_211
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_211 not in the Motif Atlas
- Homologous match to IL_4V88_464
- Geometric discrepancy: 0.1501
- The information below is about IL_4V88_464
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.1
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5M1J|1|22|G|1638
5M1J|1|22|C|1639
5M1J|1|22|C|1640
5M1J|1|22|C|1641
*
5M1J|1|22|G|1760
5M1J|1|22|U|1761
5M1J|1|22|A|1762
5M1J|1|22|A|1763
5M1J|1|22|C|1764
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain A3
- Transfer RNA; tRNA
- Chain X7
- nonstop mRNA
- Chain n5
- 60S ribosomal protein L41-B
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