IL_5M1J_215

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_215 not in the Motif Atlas

Homologous match to IL_4V88_468

Geometric discrepancy: 0.1588

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

5M1J|1|22|C|1653
5M1J|1|22|G|1654
5M1J|1|22|A|1655
5M1J|1|22|U|1656
*
5M1J|1|22|A|1744
5M1J|1|22|G|1745
5M1J|1|22|A|1746
5M1J|1|22|G|1747

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain A1

Protein DOM34

Chain n5

60S ribosomal protein L41-B