IL_5M1J_221

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_221 not in the Motif Atlas

Geometric match to IL_4V88_474

Geometric discrepancy: 0.2349

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

5M1J|1|22|A|1678
5M1J|1|22|G|1679
5M1J|1|22|G|1680
5M1J|1|22|A|1681
5M1J|1|22|U|1682
*
5M1J|1|22|A|1719
5M1J|1|22|G|1720
5M1J|1|22|A|1721
5M1J|1|22|A|1722
5M1J|1|22|U|1723

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain G2

40S ribosomal protein S6-A

Chain I2

40S ribosomal protein S8-A

Chain W5

60S ribosomal protein L24-A