IL_5M1J_226
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 5M1J|1|34|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_226 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.1083
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5M1J|1|34|A|72
5M1J|1|34|C|73
5M1J|1|34|C|74
5M1J|1|34|G|75
5M1J|1|34|A|76
5M1J|1|34|G|77
5M1J|1|34|U|78
5M1J|1|34|A|79
5M1J|1|34|G|80
*
5M1J|1|34|C|100
5M1J|1|34|G|101
5M1J|1|34|A|102
5M1J|1|34|A|103
5M1J|1|34|A|104
5M1J|1|34|C|105
5M1J|1|34|U|106
Current chains
- Chain 34
- 5S ribosomal RNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain F5
- 60S ribosomal protein L7-A
- Chain I5
- 60S ribosomal protein L10
- Chain S5
- 60S ribosomal protein L20-A
- Chain T5
- 60S ribosomal protein L21-A
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