IL_5M1J_234

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAG*CUAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_234 not in the Motif Atlas

Homologous match to IL_8P9A_269

Geometric discrepancy: 0.5757

The information below is about IL_8P9A_269

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5M1J|1|14|A|1009
5M1J|1|14|G|1010
5M1J|1|14|A|1011
5M1J|1|14|G|1012
*
5M1J|1|14|C|1038
5M1J|1|14|U|1039
5M1J|1|14|A|1040
5M1J|1|14|U|1041

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain 34

5S ribosomal RNA; 5S rRNA

Chain D5

60S ribosomal protein L5

Chain I5

60S ribosomal protein L10