IL_5M1J_246

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGCU*GAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_246 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.1174

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

5M1J|1|14|G|2823
5M1J|1|14|G|2824
5M1J|1|14|C|2825
5M1J|1|14|U|2826
*
5M1J|1|14|G|2863
5M1J|1|14|A|2864
5M1J|1|14|U|2865
5M1J|1|14|U|2866
5M1J|1|14|C|2867

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain B5

60S ribosomal protein L3

Chain I5

60S ribosomal protein L10

Chain b5

60S ribosomal protein L29