IL_5M1J_247
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAUA*UAAGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_247 not in the Motif Atlas
- Homologous match to IL_8C3A_486
- Geometric discrepancy: 0.1022
- The information below is about IL_8C3A_486
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28976.1
- Basepair signature
- cWW-L-cWW-cSH-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
5M1J|1|14|C|2889
5M1J|1|14|A|2890
5M1J|1|14|U|2891
5M1J|1|14|A|2892
*
5M1J|1|14|U|2909
5M1J|1|14|A|2910
5M1J|1|14|A|2911
5M1J|1|14|G|2912
5M1J|1|14|C|2913
5M1J|1|14|G|2914
Current chains
- Chain 14
- 25S ribosomal RNA
Nearby chains
- Chain B5
- 60S ribosomal protein L3
- Chain H5
- 60S ribosomal protein L9-A
- Chain K5
- 60S ribosomal protein L16-A
- Chain V5
- 60S ribosomal protein L23-A
- Chain m5
- Ubiquitin-60S ribosomal protein L40
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