IL_5M1J_256

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUG*CAGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M1J_256 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.3733

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

5M1J|1|22|C|700
5M1J|1|22|U|701
5M1J|1|22|G|702
*
5M1J|1|22|C|736
5M1J|1|22|A|737
5M1J|1|22|G|738
5M1J|1|22|G|739

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain E2

40S ribosomal protein S4-A

Chain L2

40S ribosomal protein S11-A