IL_5M1J_265
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGAGGC*GACAAA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_265 not in the Motif Atlas
- Geometric match to IL_1L9A_008
- Geometric discrepancy: 0.3736
- The information below is about IL_1L9A_008
- Detailed Annotation
- tSH-tHW-tHS-cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_71294.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
5M1J|1|22|U|1669
5M1J|1|22|G|1670
5M1J|1|22|A|1671
5M1J|1|22|G|1672
5M1J|1|22|G|1673
5M1J|1|22|C|1674
*
5M1J|1|22|G|1727
5M1J|1|22|A|1728
5M1J|1|22|C|1729
5M1J|1|22|A|1730
5M1J|1|22|A|1731
5M1J|1|22|A|1732
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain G2
- 40S ribosomal protein S6-A
- Chain I2
- 40S ribosomal protein S8-A
- Chain W5
- 60S ribosomal protein L24-A
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