IL_5M1J_273
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AUUAU*AGAAU
- Length
- 10 nucleotides
- Bulged bases
- 5M1J|1|14|A|3130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_273 not in the Motif Atlas
- Homologous match to IL_8CRE_129
- Geometric discrepancy: 0.1185
- The information below is about IL_8CRE_129
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_38507.2
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
5M1J|1|14|A|3103
5M1J|1|14|U|3104
5M1J|1|14|U|3105
5M1J|1|14|A|3106
5M1J|1|14|U|3107
*
5M1J|1|14|A|3127
5M1J|1|14|G|3128
5M1J|1|14|A|3129
5M1J|1|14|A|3130
5M1J|1|14|U|3131
Current chains
- Chain 14
- 25S ribosomal RNA
Nearby chains
- Chain H5
- 60S ribosomal protein L9-A
- Chain K5
- 60S ribosomal protein L16-A
- Chain m5
- Ubiquitin-60S ribosomal protein L40
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