IL_5M1J_276
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUAC*GAG
- Length
- 7 nucleotides
- Bulged bases
- 5M1J|1|22|U|1340
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_276 not in the Motif Atlas
- Homologous match to IL_8P9A_444
- Geometric discrepancy: 0.3124
- The information below is about IL_8P9A_444
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
5M1J|1|22|C|1339
5M1J|1|22|U|1340
5M1J|1|22|A|1341
5M1J|1|22|C|1342
*
5M1J|1|22|G|1383
5M1J|1|22|A|1384
5M1J|1|22|G|1385
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain Q2
- 40S ribosomal protein S16-A
- Chain R2
- 40S ribosomal protein S17-B
- Chain U2
- 40S ribosomal protein S20
- Chain g2
- Guanine nucleotide-binding protein subunit beta-like protein
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