IL_5M1J_278
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5M1J_278 not in the Motif Atlas
- Homologous match to IL_8CRE_462
- Geometric discrepancy: 0.1907
- The information below is about IL_8CRE_462
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_91698.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5M1J|1|22|G|1480
5M1J|1|22|C|1481
5M1J|1|22|C|1482
5M1J|1|22|A|1483
5M1J|1|22|G|1484
5M1J|1|22|C|1485
5M1J|1|22|G|1486
5M1J|1|22|A|1487
*
5M1J|1|22|U|1519
5M1J|1|22|U|1520
5M1J|1|22|G|1521
5M1J|1|22|U|1522
5M1J|1|22|G|1523
5M1J|1|22|A|1524
5M1J|1|22|A|1525
5M1J|1|22|A|1526
5M1J|1|22|C|1527
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain D2
- 40S ribosomal protein S3
- Chain F2
- 40S ribosomal protein S5
- Chain Q2
- 40S ribosomal protein S16-A
- Chain T2
- 40S ribosomal protein S19-A
- Chain U2
- 40S ribosomal protein S20
- Chain d2
- 40S ribosomal protein S29-A
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