IL_5M73_014

3D structure

PDB id

5M73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human SRP S domain with SRP72 RNA-binding domain

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UAU*AGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M73_014 not in the Motif Atlas

Homologous match to IL_1MFQ_003

Geometric discrepancy: 0.4685

The information below is about IL_1MFQ_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5M73|1|E|U|132
5M73|1|E|A|133
5M73|1|E|U|134
*
5M73|1|E|A|163
5M73|1|E|G|164
5M73|1|E|G|165

Current chains

Chain E

Human gene for small cytoplasmic 7SL RNA (7L30.1)

Nearby chains

Chain C

Signal recognition particle subunit SRP68

Chain G

Signal recognition particle subunit SRP68