IL_5M73_018

3D structure

PDB id

5M73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human SRP S domain with SRP72 RNA-binding domain

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCAGGU*GAGCAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5M73_018 not in the Motif Atlas

Homologous match to IL_1MFQ_007

Geometric discrepancy: 0.2111

The information below is about IL_1MFQ_007

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_35186.2

Basepair signature

cWW-tSH-tHW-L-R-cWW-cWW

Number of instances in this motif group

6

Unit IDs

5M73|1|E|C|190
5M73|1|E|C|191
5M73|1|E|A|192
5M73|1|E|G|193
5M73|1|E|G|194
5M73|1|E|U|195
*
5M73|1|E|G|204
5M73|1|E|A|205
5M73|1|E|G|206
5M73|1|E|C|207
5M73|1|E|A|208
5M73|1|E|G|209

Current chains

Chain E

Human gene for small cytoplasmic 7SL RNA (7L30.1)

Nearby chains

Chain F

Signal recognition particle 19 kDa protein