IL_5MC6_036

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGG*CA

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_036 not in the Motif Atlas

Geometric match to IL_8VTW_023

Geometric discrepancy: 0.3166

The information below is about IL_8VTW_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

5MC6|1|2|U|701
5MC6|1|2|G|702
5MC6|1|2|G|703
*
5MC6|1|2|C|736
5MC6|1|2|A|737

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A