IL_5MC6_042

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

5MC6|1|2|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_042 not in the Motif Atlas

Geometric match to IL_3TD0_002

Geometric discrepancy: 0.2387

The information below is about IL_3TD0_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

5MC6|1|2|G|868
5MC6|1|2|A|869
5MC6|1|2|C|870
*
5MC6|1|2|G|957
5MC6|1|2|U|958
5MC6|1|2|U|959
5MC6|1|2|U|960

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Y

40S ribosomal protein S13

Chain f

40S ribosomal protein S27-A