IL_5MC6_052

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_052 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0955

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

5MC6|1|2|G|1111
5MC6|1|2|G|1112
5MC6|1|2|A|1113
5MC6|1|2|G|1114
5MC6|1|2|U|1115
5MC6|1|2|A|1116
5MC6|1|2|U|1117
5MC6|1|2|G|1118
*
5MC6|1|2|U|1129
5MC6|1|2|G|1130
5MC6|1|2|A|1131
5MC6|1|2|A|1132
5MC6|1|2|A|1133
5MC6|1|2|C|1134

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AS

60S ribosomal protein L41-A

Chain c

40S ribosomal protein S23-A

Chain e

40S ribosomal protein S26-A